{ "draft": false, "prepared_on": "2026-10-03", "release_state": "Public descriptive catalog. Access, maturity and validation are specified per entry.", "purpose": "Public method and access descriptions for the research instrument catalog.", "counting_note": "The entries enumerate the existing shelf; they are not independent tools deployed as services or independently validated results.", "task_order": [ "representations", "transport", "controls", "calibration", "feedback", "evidence" ], "tools": [ { "id": "tool-01", "catalog_name": "Jacobian bridge", "display_name": "Jacobian bridge", "family_id": "jacobian", "task": "representations", "question": "How does a small directional change affect a readout?", "method": "Directional finite differences at selected model layers.", "output": "Derivative/readout estimates and comparison outputs.", "limit": "A local derivative estimate does not establish a general causal interpretation. Extraction and step-size contracts matter.", "maturity": "Research prototype", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#jacobian", "action_label": "Read the method", "action_href": "/research#jacobian", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Checkpoint/residual access, layer/tap definition, prompt pool and finite-difference step contract.", "compatibility": "Internal-access prototype; estimator and normalization must match the source.", "inputs": "Prompts, selected residual directions/layers and step sizes.", "graph_id": "instrument:tool-01", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#jacobian" } }, { "id": "tool-02", "catalog_name": "Ridge readout lenses", "display_name": "Ridge readout lenses", "family_id": "jacobian", "task": "representations", "question": "What can a fitted linear readout recover at a layer?", "method": "Fit and compare ridge readouts under a declared split and tap recipe.", "output": "Readout performance and onset comparisons.", "limit": "This is a fitted linear readout, not a Jacobian. Model and normalization identities must be recorded.", "maturity": "Research prototype", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#jacobian", "action_label": "Read the method", "action_href": "/research#jacobian", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Checkpoint/residual access, normalization contract and explicit train/test split.", "compatibility": "Fitted linear readout; not interchangeable with directional derivatives.", "inputs": "Layer activations and corresponding prediction targets under a recorded split.", "graph_id": "instrument:tool-02", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#jacobian" } }, { "id": "tool-03", "catalog_name": "Silhouette arbitrary-frame API", "display_name": "Silhouette arbitrary-frame API", "family_id": "magic_eye", "task": "representations", "question": "How does a representation read under a researcher-defined frame?", "method": "Compare embedding anchors defined by names and region descriptors.", "output": "Frame rankings, margins and uncharted conditions.", "limit": "A chosen descriptor frame is an instrument definition, not an intrinsic ontology or universal calibrated scale.", "maturity": "Research prototype", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#magic-eye", "action_label": "Read the method", "action_href": "/research#magic-eye", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "An identified embedding encoder, descriptor frame and anchor/reference assets.", "compatibility": "All frame and input embeddings must use the compatible encoder and preprocessing.", "inputs": "Named regions/descriptors, embedding anchors and a query representation.", "graph_id": "instrument:tool-03", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#magic-eye" } }, { "id": "tool-04", "catalog_name": "Cartography Gaussian dual null", "display_name": "Cartography Gaussian dual null", "family_id": "magic_eye", "task": "controls", "question": "Does a geometric statistic survive a covariance-aware comparison?", "method": "Construct covariance-matched surrogates and separate shuffle/order controls.", "output": "Statistic and null comparisons.", "limit": "The recovered implementation has version-specific limits; revised paper statistics are not all bound to this source.", "maturity": "Research prototype", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#magic-eye", "action_label": "Read the method", "action_href": "/research#magic-eye", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Population matrix, SVD/covariance recipe, matched controls and statistic definition.", "compatibility": "Recovered implementation and later paper statistics have distinct version bindings.", "inputs": "Recorded population representations and specified Gaussian/control constructions.", "graph_id": "instrument:tool-04", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#magic-eye" } }, { "id": "tool-05", "catalog_name": "Rotated lens", "display_name": "Rotated lens", "family_id": "chronos", "task": "representations", "question": "What changes under a fitted within-model rotation?", "method": "PCA, Procrustes alignment and linear-probe transport.", "output": "Alignment and probe comparisons.", "limit": "Recovered source has missing helpers, fit/score reuse and transport-algebra issues. It is not ready to offer as a validated instrument.", "maturity": "Incomplete research source", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#chronos", "action_label": "Read the method", "action_href": "/research#chronos", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Missing source helpers must be resolved; compatible model activations and fit/evaluation inputs.", "compatibility": "Incomplete source; fit/score reuse and transport algebra require review before use.", "inputs": "Layer representations, paired examples and a declared probe/rotation recipe.", "graph_id": "instrument:tool-05", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#chronos" } }, { "id": "tool-06", "catalog_name": "Grassmannian velocity", "display_name": "Grassmannian velocity", "family_id": "chronos", "task": "representations", "question": "How do selected subspaces move across layers?", "method": "SVD analogy subspaces, nuisance projection and principal angles.", "output": "Consecutive-layer subspace distances.", "limit": "Helper and result gaps remain. A subspace comparison does not establish a shared causal mechanism.", "maturity": "Incomplete research source", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#chronos", "action_label": "Read the method", "action_href": "/research#chronos", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Missing helpers/results must be resolved; layer representations and nuisance directions.", "compatibility": "Subspace definitions and layer/extraction choices are model-specific.", "inputs": "Analogy subspaces across layers and declared nuisance vectors.", "graph_id": "instrument:tool-06", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#chronos" } }, { "id": "tool-07", "catalog_name": "CHRONOS empirical lens", "display_name": "CHRONOS empirical lens", "family_id": "aperture", "task": "representations", "question": "How does a reading compare with an empirical reference frame?", "method": "Cosine-neighbor comparisons with reference-to-reference baselines.", "output": "Reference comparisons under a declared atlas and encoder.", "limit": "Requires specific atlas/model assets; its baseline is distinct from a calibrated covariance-Gaussian null.", "maturity": "Research prototype", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#aperture", "action_label": "Read the method", "action_href": "/research#aperture", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Identified encoder and empirical reference atlas with its construction metadata.", "compatibility": "Reference comparisons require the same embedding/preprocessing contract.", "inputs": "Query representation and reference-to-reference comparisons.", "graph_id": "instrument:tool-07", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#aperture" } }, { "id": "tool-08", "catalog_name": "Calibration probe", "display_name": "Calibration probe", "family_id": "aperture", "task": "calibration", "question": "Can generated anchors support a useful instrument boundary?", "method": "Generator-driven anchors with novelty/separation heuristics and gates.", "output": "Anchor diagnostics and gate conditions.", "limit": "An active harness, not an offline verifier or an established general calibration result.", "maturity": "Research prototype", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#aperture", "action_label": "Read the method", "action_href": "/research#aperture", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Compatible endpoint or internal readout recipe, battery and feature contract.", "compatibility": "Endpoint output features and internal activation features are different instruments.", "inputs": "Battery items, responses/features, labels and configuration.", "graph_id": "instrument:tool-08", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#aperture" } }, { "id": "tool-09", "catalog_name": "Translation lens", "display_name": "Translation lens", "family_id": "aperture", "task": "transport", "question": "What symbol/context structure can a local induction method recover?", "method": "Co-occurrence and PMI-based grammar induction.", "output": "Symbol/context and grammar outputs.", "limit": "Do not treat this source as a binding to a different model-training study.", "maturity": "Exploratory research source", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#aperture", "action_label": "Read the method", "action_href": "/research#aperture", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Paired concept inputs, compatible encoders/taps and fit/test separation.", "compatibility": "Dimensions, rank, extraction recipe and coordinate conventions must be recorded.", "inputs": "Paired representations and the instrument/readout to transport.", "graph_id": "instrument:tool-09", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#aperture" } }, { "id": "tool-10", "catalog_name": "Portable probes", "display_name": "Portable probes", "family_id": "static_transport", "task": "transport", "question": "Can a declared linear readout be carried into an evaluation pipeline?", "method": "Validate input schemas and score pooled representations with a linear probe.", "output": "Scores and input-admission diagnostics.", "limit": "A valid artifact schema does not establish semantic accuracy or calibrated self-report.", "maturity": "Research prototype", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#static-transport", "action_label": "Read the method", "action_href": "/research#static-transport", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Receiver residual access and a version-bound ingress/probe package.", "compatibility": "Static readout ingress does not establish reliable causal intervention.", "inputs": "A bound probe, selected residual tap and receiver configuration.", "graph_id": "instrument:tool-10", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#static-transport" } }, { "id": "tool-11", "catalog_name": "Atlas", "display_name": "Atlas", "family_id": "static_transport", "task": "transport", "question": "How well does a fitted transport map carry static probes?", "method": "Fit/stitch transport with held-out evaluation and matched orientation controls.", "output": "Stored transport decisions and comparison receipts.", "limit": "Bounded historical readouts; original activations/acquisition are incomplete. This differs from the public basin-atlas visualization.", "maturity": "Documented pilot and research source", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#static-transport", "action_label": "Read the method", "action_href": "/research#static-transport", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Source/target feature matrices, atlas/stitch recipe and independent evaluation membership.", "compatibility": "Recorded static transfer and its orientation floors are method-specific.", "inputs": "Paired fit representations, probes and held-out evaluation records.", "graph_id": "instrument:tool-11", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#static-transport" } }, { "id": "tool-12", "catalog_name": "Whitening port", "display_name": "Whitening port", "family_id": "static_transport", "task": "transport", "question": "Does covariance conditioning change a transport comparison?", "method": "Shrinkage whitening, alignment, recoloring and probe evaluation.", "output": "Transport statistics and matched-rotation controls.", "limit": "Fit/holdout separation is a caller responsibility. These controls are not full covariance-Gaussian surrogates.", "maturity": "Research prototype", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#static-transport", "action_label": "Read the method", "action_href": "/research#static-transport", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Fit covariance, shrinkage/whitening choices and independent evaluation inputs.", "compatibility": "Random-rotation floors are distinct from full covariance-Gaussian surrogates.", "inputs": "Source/target covariance and representations with a readout to port.", "graph_id": "instrument:tool-12", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#static-transport" } }, { "id": "tool-13", "catalog_name": "Shared dimension", "display_name": "Shared dimension", "family_id": "shared_dimension", "task": "transport", "question": "How much held-out operator structure is shared?", "method": "Fit-only whitening, ridge operators, correspondence shuffles and width checks.", "output": "Explained-operator statistics and plateau/refusal records.", "limit": "A correspondence shuffle answers a different question from a Gaussian surrogate. Insufficient draws or absent plateaus should be reported.", "maturity": "Research prototype", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#shared-dimension", "action_label": "Read the method", "action_href": "/research#shared-dimension", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Recorded fit/held-out blocks, width sequence, null draws and plateau rule.", "compatibility": "Insufficient draws or absent plateaus require refusal; controls must match the statistic.", "inputs": "Paired operators/representations and declared width/control settings.", "graph_id": "instrument:tool-13", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#shared-dimension" } }, { "id": "tool-14", "catalog_name": "Dark-matter census", "display_name": "Dark-matter census", "family_id": "lgp", "task": "representations", "question": "What does a population spectrum contain under a stated construction?", "method": "Known-answer synthetic bodies and cached population comparisons.", "output": "Norm/spectrum diagnostics and refusal records.", "limit": "Population definitions, width sensitivity and cache custody constrain interpretation. Acquisition code is not a passive inspector.", "maturity": "Research prototype", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#lgp", "action_label": "Read the method", "action_href": "/research#lgp", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "A population definition, identified cache or explicit synthetic construction.", "compatibility": "A model roster is not a completed study; a natural spectrum needs a bound cache.", "inputs": "Population matrices, norm/width choices or known-answer synthetic bodies.", "graph_id": "instrument:tool-14", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#lgp" } }, { "id": "tool-15", "catalog_name": "Port certificate", "display_name": "Port certificate", "family_id": "statistical_calibration", "task": "calibration", "question": "Does a trained transport statistic exceed its declared floor?", "method": "Record trained-minus-floor contrasts, uncertainty and refusal conditions.", "output": "Decision and uncertainty receipts.", "limit": "Stored summary uncertainty is not equivalent to a paired resampling analysis of original predictions.", "maturity": "Research prototype", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#statistical-calibration", "action_label": "Read the method", "action_href": "/research#statistical-calibration", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Trained and matched-floor results, evaluation membership and uncertainty method.", "compatibility": "Summary-only AUROC uncertainty differs from prediction-level paired resampling.", "inputs": "Versioned readout scores/floors and available prediction or summary records.", "graph_id": "instrument:tool-15", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#statistical-calibration" } }, { "id": "tool-16", "catalog_name": "Causal-excess controls", "display_name": "Causal-excess controls", "family_id": "causal_controls", "task": "controls", "question": "Which invariants should a causal comparison preserve?", "method": "Construct controls that retain specified geometric properties.", "output": "Control vectors and declared invariants.", "limit": "Control construction alone is not evidence of causal effect. The CT0-A formulation was retired without a model result.", "maturity": "Research source; retired formulation retained", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#causal-controls", "action_label": "Read the method", "action_href": "/research#causal-controls", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "An explicit invariant contract and evidence binding the actual scored vectors.", "compatibility": "Retired formulations and source availability do not authorize a causal success claim.", "inputs": "Vectors/operators and the geometric invariants each control must preserve.", "graph_id": "instrument:tool-16", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#causal-controls" } }, { "id": "tool-17", "catalog_name": "RKC0 summary", "display_name": "RKC0 summary", "family_id": "statistical_calibration", "task": "calibration", "question": "Does a decision rule behave correctly in known-answer worlds?", "method": "Synthetic decision-calibration summaries and interval accounting.", "output": "Stored decision and uncertainty records.", "limit": "Decision arithmetic does not admit the full natural-model pipeline or establish a biological/causal interpretation.", "maturity": "Documented synthetic calibration", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#statistical-calibration", "action_label": "Read the method", "action_href": "/research#statistical-calibration", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Access to the retained synthetic summary, seal and governing decision rule.", "compatibility": "Stored decision arithmetic is not a complete natural-model pipeline.", "inputs": "Existing planted/matched-null summary records and scope seal.", "graph_id": "instrument:tool-17", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "Retained summary/commitment description; no public executable release implied", "reference": "/research#statistical-calibration" } }, { "id": "tool-18", "catalog_name": "TC2 source/seed commitment", "display_name": "TC2 source/seed commitment", "family_id": "statistical_calibration", "task": "calibration", "question": "What calibration design and seeds were committed?", "method": "Versioned source and synthetic-world seed commitment.", "output": "Design/commitment provenance.", "limit": "A committed plan is not a completion receipt. No current job-state or finished-result claim is made.", "maturity": "Design commitment; completion unbound", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#statistical-calibration", "action_label": "Read the method", "action_href": "/research#statistical-calibration", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Access to the versioned source/seed commitment and any separately recovered terminal record.", "compatibility": "A commitment or historical in-flight note is not proof of completion.", "inputs": "Existing source/seed protocol metadata; terminal evidence where available.", "graph_id": "instrument:tool-18", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "Retained summary/commitment description; no public executable release implied", "reference": "/research#statistical-calibration" } }, { "id": "tool-19", "catalog_name": "Calibration data", "display_name": "Calibration data", "family_id": "feedback", "task": "feedback", "question": "What does a feedback/self-report calibration assay actually learn?", "method": "Calibration data construction, LoRA training and controlled evaluation.", "output": "Calibration and control summaries.", "limit": "Natural-model self-report calibration is not established; transcript shortcuts and failed or marginal results remain relevant.", "maturity": "Research prototype", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#feedback", "action_label": "Read the method", "action_href": "/research#feedback", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Model/checkpoint access, calibration data, feedback feature contract and matched control arms.", "compatibility": "Training loss or a transcript shortcut does not establish truthful natural self-report.", "inputs": "Versioned feedback/calibration data, model settings and evaluation controls.", "graph_id": "instrument:tool-19", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#feedback" } }, { "id": "tool-20", "catalog_name": "Crossing spine", "display_name": "Crossing spine", "family_id": "integrity", "task": "evidence", "question": "Can stored decisions and receipt accounting be replayed?", "method": "Model-free integrity and bounded receipt replay.", "output": "Decision, schema and integrity checks.", "limit": "Integrity checks do not certify truth, natural capability or physical containment.", "maturity": "Research integrity prototype", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#integrity", "action_label": "Read the method", "action_href": "/research#integrity", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Versioned schemas, payloads, accounting rules and verification keys where required.", "compatibility": "Integrity/replay checks do not attest truth, capability or physical containment.", "inputs": "Existing receipts, ledger/accounting records and source contracts.", "graph_id": "instrument:tool-20", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#integrity" } }, { "id": "tool-21", "catalog_name": "Axis builder", "display_name": "Axis builder", "family_id": "static_transport", "task": "calibration", "question": "Which labeled inputs and holdouts define the assay?", "method": "Build declared axis corpora and evaluation inputs.", "output": "Axis rows, input identities and split-related records.", "limit": "Recoverable inputs are not recovered model activations or original effects. Dataset redistribution terms require separate review.", "maturity": "Research data builder", "access": "Source not publicly released", "license": "No public release license established in this catalog.", "method_href": "/research#static-transport", "action_label": "Read the method", "action_href": "/research#static-transport", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Identified dataset revisions, builder dependencies and explicit split membership.", "compatibility": "Dataset terms and weak-label/ordering choices require separate review.", "inputs": "Named corpus sources, labels, axis construction and held-out membership.", "graph_id": "instrument:tool-21", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for source inspection or stored-record review. Model-access methods may require substantial compute; endpoint/provider charges are configuration-specific. No cost estimate or free execution is promised.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#static-transport" } }, { "id": "tool-22", "catalog_name": "`nulltest.py` and the local fixed-battery reviewer", "display_name": "nulltest.py and the local fixed-battery reviewer", "family_id": "honesty_tools", "task": "evidence", "question": "Can benchmark labels be recovered from the input surface?", "method": "Out-of-fold surface probes with a permutation-based decision rule.", "output": "Surface-floor verdict, effect and test diagnostics.", "limit": "A PASS is limited to the probes, sample size and test configuration. The local review wrapper is not itself a published release.", "maturity": "Public utility; private review wrapper", "access": "Public upstream source; wrapper not released", "license": "Apache-2.0 for the public honesttools source only; local wrapper release is separate.", "method_href": "/research#honesty-tools", "action_label": "Inspect public source", "action_href": "https://github.com/techno-optimist/honesttools", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Public nulltest source, Python standard library and an authorized labeled JSON battery.", "compatibility": "Specify text/label/stratum fields; power and family/permutation settings constrain interpretation.", "inputs": "A JSON battery with text, binary labels and optional strata; no model access needed.", "graph_id": "instrument:tool-22", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for the specific utility, with runtime dependent on input size and test settings. Other charter or Photon service actions have separate access/cost contracts.", "usage_example": { "state": "Public README source-checked at the cited revision; not executed in this site review", "command": "python3 nulltest.py battery.json --json", "reference": "https://github.com/techno-optimist/honesttools/blob/87b30e382c8dbed6b1bf897aeb75e0d900197e76/README.md", "note": "Use only after permission to compute on the chosen battery. Standard-library local computation; no model/API call. A PASS has stated power and feature limits." } }, { "id": "tool-23", "catalog_name": "`claim_gate.py`", "display_name": "claim_gate.py", "family_id": "honesty_tools", "task": "evidence", "question": "Are published numbers attached to declared sources?", "method": "Lint numerical annotations against a registry and strictness policy.", "output": "Unannotated-number and source/battery warnings or failures.", "limit": "A provenance linter does not validate the science. Warning/strict modes and skipped checks affect its coverage.", "maturity": "Public source utility", "access": "Public source", "license": "Apache-2.0 for the public honesttools source only; local wrapper release is separate.", "method_href": "/research#honesty-tools", "action_label": "Inspect public source", "action_href": "https://github.com/techno-optimist/honesttools", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "The public claim-gate source, registry/battery records and its expected adjacent page tree.", "compatibility": "A bare checkout lacks the site tree expected by the source; warnings and strict failure differ.", "inputs": "Page numerical annotations and versioned registry/floor records.", "graph_id": "instrument:tool-23", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for the specific utility, with runtime dependent on input size and test settings. Other charter or Photon service actions have separate access/cost contracts.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#honesty-tools" } }, { "id": "tool-24", "catalog_name": "`render_audit.py` and `nulltest_parity.sh`", "display_name": "render_audit.py and nulltest_parity.sh", "family_id": "honesty_tools", "task": "evidence", "question": "Do a rendered result and selected implementations agree under their check?", "method": "Stale-render checks and bounded Python/JavaScript fixture parity.", "output": "Render/fixture comparisons.", "limit": "Fixture parity does not establish universal implementation equivalence. Some modes write outputs.", "maturity": "Public source utilities", "access": "Public source", "license": "Apache-2.0 for the public honesttools source only; local wrapper release is separate.", "method_href": "/research#honesty-tools", "action_label": "Inspect public source", "action_href": "https://github.com/techno-optimist/honesttools", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Public render/parity source, expected adjacent site tree and compatible Python/JavaScript runtimes.", "compatibility": "Parity checks bounded fixtures and precision; rendering may write unless check mode is used.", "inputs": "Audit result/manifest records or declared parity fixtures.", "graph_id": "instrument:tool-24", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for the specific utility, with runtime dependent on input size and test settings. Other charter or Photon service actions have separate access/cost contracts.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#honesty-tools" } }, { "id": "tool-25", "catalog_name": "`honest.py` / `contract.py`", "display_name": "honest.py / contract.py", "family_id": "honesty_tools", "task": "evidence", "question": "How does a packaged tool declare status, tests and refusal?", "method": "A command registry and tool contract for stable/experimental use.", "output": "Tool status and contract outputs.", "limit": "Release-specific gate behavior must be checked; packaging does not certify every experimental implementation.", "maturity": "Public source contract; experimental components", "access": "Public source", "license": "Apache-2.0 for the public honesttools source only; local wrapper release is separate.", "method_href": "/research#honesty-tools", "action_label": "Inspect public source", "action_href": "https://github.com/techno-optimist/honesttools", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "prerequisites": "Public command/contract source and the specific tool release status.", "compatibility": "Stable/experimental states and known green-gate limitations must be read per tool.", "inputs": "Tool identity, contract/FPR document and command-specific input.", "graph_id": "instrument:tool-25", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for the specific utility, with runtime dependent on input size and test settings. Other charter or Photon service actions have separate access/cost contracts.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#honesty-tools" } }, { "id": "tool-26", "catalog_name": "Signed verification / broader charter", "display_name": "Signed verification / broader charter", "family_id": "honesty_tools", "task": "evidence", "question": "Who signed these bytes, and what does the tool contract cover?", "method": "Signature verification plus a public ledger of available and proposed tools.", "output": "Authenticity checks and release/proposal status.", "limit": "Signatures do not establish truth. Transparency witnessing/co-signing and proposed tools are separate maturity questions.", "maturity": "Public verification utility and proposal ledger", "access": "Public source; additional tools vary", "license": "Use the license in each public source artifact; the public honesttools repository is Apache-2.0. Other artifacts are not covered by that license.", "method_href": "/research#honesty-tools", "action_label": "Inspect public source", "action_href": "https://github.com/techno-optimist/honesttools", "replication_note": "See the evidence record; executable source, packaging checks and retained summaries are not independent scientific replication.", "public_verifier_href": "/verifier/aperture_verify.py", "prerequisites": "Versioned verifier/specification, signed payload and the issuer public key.", "compatibility": "Different proposed or partial tools have separate availability; no blanket shipped status.", "inputs": "Exact signed bytes, signature/public key and governing verification spec.", "graph_id": "instrument:tool-26", "reproducibility": "Record the exact artifact version, input identity, extraction/settings, split/control definitions, seed and output receipt. Distinguish source inspection, stored-summary replay and independent experiment replication.", "operational_boundary": "Use requires separate authorization for the selected inputs, compute and actions. This catalog does not authorize experiments, model/provider calls, training, publication or private-data transfer.", "costs": "Local CPU/time for the specific utility, with runtime dependent on input size and test settings. Other charter or Photon service actions have separate access/cost contracts.", "usage_example": { "state": "No public runnable command verified for this entry", "reference": "/research#honesty-tools" } } ], "research_families": [ { "id": "chronos", "anchor": "chronos", "name": "CHRONOS", "summary": "Layer and subspace instruments for questions about inherited structure and representation change.", "limit": "Historical documents and source have assay/helper gaps; no general mechanism claim is established.", "source_access": "Public originals linked where released; unreleased sources require separate access.", "tool_ids": [ "tool-05", "tool-06" ] }, { "id": "aperture", "anchor": "aperture", "name": "Aperture", "summary": "Instrument dependence, empirical reference frames and calibration.", "limit": "Instrument definitions and extraction settings constrain each reading.", "source_access": "Public originals linked where released; unreleased sources require separate access.", "tool_ids": [ "tool-07", "tool-08", "tool-09" ] }, { "id": "gi", "anchor": "gi", "name": "Geometric interpretability", "summary": "Correspondence, portable reading and the difference between reading and intervention.", "limit": "Fit/held-out separation, rank, nulls and acquisition custody remain method-specific.", "source_access": "Public originals linked where released; unreleased sources require separate access.", "tool_ids": [] }, { "id": "magic_eye", "anchor": "magic-eye", "name": "Magic Eye and cartography", "summary": "Researcher-defined descriptor frames and geometric control comparisons.", "limit": "Frames are constructed instruments; revised statistical implementations are not all bound to recovered source.", "source_access": "Public originals linked where released; unreleased sources require separate access.", "tool_ids": [ "tool-03", "tool-04" ] }, { "id": "photon", "anchor": "photon", "name": "Photon", "summary": "Grounding, output/internal readouts, escalation and verification in a composed system.", "limit": "Coverage and phrasing failures remain; familiarity and signed outputs are not truth certification.", "source_access": "Public originals linked where released; unreleased sources require separate access.", "tool_ids": [] }, { "id": "lgp", "anchor": "lgp", "name": "Language Genome", "summary": "Population definitions, symbol/context questions and synthetic/cached comparisons.", "limit": "Registries, populations and training studies are separate evidence records; a roster is not a completed run.", "source_access": "Public originals linked where released; unreleased sources require separate access.", "tool_ids": [ "tool-14" ] }, { "id": "static_transport", "anchor": "static-transport", "name": "Static probes and transport", "summary": "Probe ingress, atlas/stitch maps, covariance conditioning and axis inputs.", "limit": "Stored decisions can be inspectable while original activations and acquisition remain incomplete.", "source_access": "Public originals linked where released; unreleased sources require separate access.", "tool_ids": [ "tool-10", "tool-11", "tool-12", "tool-21" ] }, { "id": "shared_dimension", "anchor": "shared-dimension", "name": "Shared dimension", "summary": "Held-out operator correspondence, width and plateau comparisons.", "limit": "The floor must match the statistic; missing plateaus and insufficient draws are informative limits.", "source_access": "Public originals linked where released; unreleased sources require separate access.", "tool_ids": [ "tool-13" ] }, { "id": "causal_controls", "anchor": "causal-controls", "name": "Causal controls", "summary": "Invariant-preserving control construction and causal-interpretation boundaries.", "limit": "A constructed control does not itself establish a causal effect; retired formulations remain labeled.", "source_access": "Public originals linked where released; unreleased sources require separate access.", "tool_ids": [ "tool-16" ] }, { "id": "statistical_calibration", "anchor": "statistical-calibration", "name": "Statistical calibration", "summary": "Known-answer decisions, uncertainty and certificate rules.", "limit": "Synthetic decision arithmetic does not establish a complete natural-model pipeline.", "source_access": "Public originals linked where released; unreleased sources require separate access.", "tool_ids": [ "tool-15", "tool-17", "tool-18" ] }, { "id": "feedback", "anchor": "feedback", "name": "Residual feedback", "summary": "Engineered feedback, calibration and self-report assays.", "limit": "Control and shortcut results limit interpretation; no biological-nerve or consciousness claim is implied.", "source_access": "Public originals linked where released; unreleased sources require separate access.", "tool_ids": [ "tool-19" ] }, { "id": "receiver", "anchor": "receiver", "name": "Receiver integration", "summary": "Component-preserving integration in a bounded instructed study.", "limit": "A paper-version lineage is not independent replication; broader capability and checkpoint evidence is incomplete.", "source_access": "Public originals linked where released; unreleased sources require separate access.", "tool_ids": [] }, { "id": "honesty_tools", "anchor": "honesty-tools", "name": "Honesty utilities", "summary": "Public model-free benchmark, annotation, rendering, contract and receipt checks.", "limit": "Each utility tests a stated property under its own release contract, not universal scientific correctness.", "source_access": "Public originals linked where released; unreleased sources require separate access.", "tool_ids": [ "tool-22", "tool-23", "tool-24", "tool-25", "tool-26" ] }, { "id": "integrity", "anchor": "integrity", "name": "Integrity and replay", "summary": "Schema, accounting, notary and receipt replay.", "limit": "Artifact integrity is separate from truth, natural capability and physical containment.", "source_access": "Public originals linked where released; unreleased sources require separate access.", "tool_ids": [ "tool-20" ] }, { "id": "jacobian", "anchor": "jacobian", "name": "Jacobian and ridge lenses", "summary": "Directional derivatives and separately fitted linear readouts.", "limit": "Derivative and fitted-readout methods are distinct; original acquisition remains incomplete.", "source_access": "Public originals linked where released; unreleased sources require separate access.", "tool_ids": [ "tool-01", "tool-02" ] } ], "agent_contract_version": 1, "graph_id_note": "Stable instrument IDs reserved for the approved private graph design; no public graph store or runtime integration is implied.", "single_source_note": "The public tool cards, JSON and generated agent guide are built from this same authoring catalog." }